Bump tools version to `0.0.3`. (#6771)

The IntelliJ plugin will use this as a baseline to ensure that the installed tools support the expected message formats.

To see where this applies, look at https://github.com/flutter/flutter-intellij/pull/426

The changes we’re checking for were introduced in https://github.com/flutter/flutter/commit/1f1adcaa0e563cb68ec5f0d2f82efc9759be1221